DNA29 - Tohoku University, Sendai

09/05/2023

Poster Sessions

Poster Instruction

NOTICE: Poster sessions have been updated so that students and postdocs eligible for poster awards will present their posters in poster sessions 1 and 2 (08/15/2023).

The size of the panel is 1,660mm (H) x 1,130mm (W).
Please prepare your poster within this range.


Poster Session 1 - September 11th, 17:30-19:30

#1-01 Accelerating DNA Strand Displacement Cascades Enabling Rapid Detection of Low Concentration Signals
Cadence Pearce, Paul Rothemund and Chris Thachuk (eligible for best student/postdoc poster award)
#1-02 µLAF: Size-fractionation of milli-liter DNA samples in minutes using electrohydrodynamic migration
Paul Bruand, Inga Tijunelyte, Soo Hyeon Kim, Pierre Joseph and Aurelien Bancaud (eligible for best student/postdoc poster award)
#1-03 Toward a DNA origami-based motor with power stroke mechanism
Akihiro Fukuda, Yusuke Sato, Takeshi Yokoyama, Yoshikazu Tanaka and Shoichi Toyabe (eligible for best student/postdoc poster award)
#1-04 Multiplexed analyte quantification with cross-reactive affinity reagents
Sharon Newman, Linus Hein, Alexandra Adams and H. Tom Soh (eligible for best student/postdoc poster award)
#1-05 Massively Parallel Synthesis and Readout of DNA logic circuits
Samantha Borje, Chandler Petersen, Yuan-Jyue Chen and Georg Seelig (eligible for best student/postdoc poster award)
#1-06 Programmed delivery of genes using DNA origami
Samuel Beerkens, Michael Pinner, Jessica Kretzmann and Hendrik Dietz (eligible for best student/postdoc poster award)
#1-07 DNA high-pass filter gate
Tatsuhiro Saitoh, Kaori Aso, Tom Greef and Takashi Nakakuki (eligible for best student/postdoc poster award)
#1-08 'dna-origami-db' towords automation of DNA origami research
Yusuke Sakai (eligible for best student/postdoc poster award)
#1-09 A Hydrogel Chemical Sensor Based on Aptamer Recognition and DNA Strand Replacement Reactions
Satofumi Kato, Yurika Ishiba, Masahiro Takinoue and Hiroaki Onoe (eligible for best student/postdoc poster award)
#1-10 Trapping and reordering two adjacent cell-sized liposomes in a microfluidic device
Haruto Obuchi, Yiting Zhang, Shogo Hamada, Hironori Sugiyama, Keita Abe, Akihiro Inada, Teijiro Isokawa, Satoshi Murata and Taro Toyota (eligible for best student/postdoc poster award)
#1-11 FluoroPhone: Affordable Detection of Molecular Output
Jason Hoffman, Zoe Derauf, Cadence Pearce, Jiaming Li, Shwetak Patel and Chris Thachuk (eligible for best student/postdoc poster award)
#1-12 DNAForge: A Design Tool for Nucleic Acid Wireframe Nanostructures
Antti Elonen, Abdulmelik Mohammed and Pekka Orponen (eligible for best student/postdoc poster award)
#1-13 ViDa: Visualization of DNA Reaction Trajectories using Deep Graph Embeddings
Chenwei Zhang, Jordan Lovrod, Boyan Beronov, Khanh Dao Duc, and Anne Condon (eligible for best student/postdoc poster award)
#1-14 An error correction strategy for image reconstruction by DNA sequencing microscopy
Alexander Kloosterman, Igor Baars and Björn Högberg (eligible for best student/postdoc poster award)
#1-15 Universal Constructor Tile Sets for Models of Backbone and Sequence-Directed aTAM
Jeremy Guntoro and Thomas Ouldridge (eligible for best student/postdoc poster award)
#1-16 Parallel Kinetic Measurement of Temperature-Dependent DNA Devices
Mamoru Saita and Yutaka Hori (eligible for best student/postdoc poster award)
#1-17 Systematic non-natural base pairs for robust strand displacement in complex environments
Tiernan Kennedy, Thomas Mayer, Chris Thachuk and Friedrich Simmel (eligible for best student/postdoc poster award)
#1-18 GradHC: Highly Reliable Gradual Hash-based Clustering for DNA Storage Systems
Dvir Ben Shabat, Adar Hadad, Avital Boruchovsky and Eitan Yaakobi (eligible for best student/postdoc poster award)
#1-19 Hierarchical Assembly of Addressable 3D Nanostructures
Samson Petrosyan and Grigory Tikhomirov (eligible for best student/postdoc poster award)
#1-20 Coupled reconfiguration mechanisms in DNA strand displacement
Hope Amber Johnson and Anne Condon (eligible for best student/postdoc poster award)
#1-21 oxDNA ecosystem: design, analysis and archival of nanostructures
Michael Matthies, Erik Poppleton, Joakim Bohlin, Jonah Procyk and Petr Sulc (eligible for best student/postdoc poster award)
#1-22 Turning Machines: DNA implementation of a simple molecular robot
Cai Wood and Damien Woods (eligible for best student/postdoc poster award)
#1-23 Sequential assembly of DNA origami
Myoungseok Kim and Grigory Tikhomirov
#1-24 Renewable Time-Responsive DNA Circuits with Photo-Responsive Bases
Taien Shimizu and Satoshi Kobayashi (eligible for best student/postdoc poster award)
#1-25 Controlled division of DNA droplet-based artificial cells coupled with enzymatic time delay circuit
Tomoya Maruyama, Ryohei Furuichi, Akihiro Yamamoto, Jing Gong and Masahiro Takinoue (eligible for best student/postdoc poster award)
#1-26 Hierarchical self-assembly of DNA origami nanoactuators toward large deformation of cellular-sized liposomes
Reo Toho, Shin Watanabe, Ibuki Kawamata and Yuki Suzuki (eligible for best student/postdoc poster award)
#1-27 Design of immiscible DNA liquids towards macroscopic compartmentalization
Olivia Zou, Nathaniel Conrad, Byoung-Jin Jeon, Deborah K. Fygenson and Paul W. K. Rothemund (eligible for best student/postdoc poster award)
#1-28 Heterochiral modifications enhance robustness and function of DNA in living human cells
Tracy L. Mallette, Diane S. Lidke and Matthew R. Lakin (eligible for best student/postdoc poster award)
#1-29 An isothermal nucleic acid recognition and signal amplification assay for modular detection of viral pathogens
Krishna Gupta and Elisha Krieg (eligible for best student/postdoc poster award)
#1-30 Design-based strategies for preventing aggregation of DNA origami
Jonathan Berengut and Lawrence Lee (eligible for best student/postdoc poster award)
#1-31 DNA circuits integrating Cas12a for cell surface computation
Yahui Gao, Yan Shan Ang and Lanry Lin-Yue Yung (eligible for best student/postdoc poster award)
#1-32 High-affinity binding to the SARS-CoV-2 spike trimer by ananostructured, trivalent protein-DNA synthetic antibody
Matthew Sample, Yang Xu, Rong Zheng, Abhay Prasad, Minghui Liu, Zijian Wan, Xiaoyan Zhou, Erik Poppleton, Jonah Procyk, Hao Liu, Henry Lee, Hao Yan, Nicholas Stephanopoulos and Petr Sulc (eligible for best student/postdoc poster award)
#1-33 DNA Origami Voltage Sensitive Contrast Agents for MRI
Benjamin Cary and Grigory Tikhomirov (eligible for best student/postdoc poster award)
#1-34 A method to simulate the derivation process of context-free grammars by DNA strand displacements
Naoyuki Hiratsuka and Satoshi Kobayashi (eligible for best student/postdoc poster award)
#1-35 Training and interpreting pattern formation in neural reaction-diffusion systems
Salvador Buse and Erik Winfree (eligible for best student/postdoc poster award)
#1-36 molpigs: The Molecular Programming Interest Group
Boya Wang, Erik Poppleton, Georgeos Hardo and Hannah Earley
#1-37 The Art of Molecular Programming, a Molecular Programming Society project
Boya Wang, Sam Davidson and Hannah Earley



Poster Session 2 - September 12th, 17:30-19:30

#2-01 Development of a Novel Approach to Reconstruct Biological Samples under Load
Massimo Kube and Hendrik Dietz (eligible for best student/postdoc poster award)
#2-02 multispecific-ELISA, a high-throughput assay to determine antibody multivalent binding to nanoscale ligand patterns
Iris Rocamonde-Lago, Ian T. Hoffecker and Björn Högberg (eligible for best student/postdoc poster award)
#2-03 Transferrin receptor-mediated cellular uptake of gene-encoding DNA origami
Viktorija Kozina, Luca Herrmann, Samuel Beerkens, Michael Pinner and Hendrik Dietz (eligible for best student/postdoc poster award)
#2-04 Trapping Filamentous Viruses with DNA Origami
Barbara Wittmann, Alba Monferrer i Sureda, Jessica Kretzmann, Samuel Beerkens and Hendrik Dietz (eligible for best student/postdoc poster award)
#2-05 Effects of excess DNA probes on DNA detection at femtomolar levels using a biological nanopore
Nanami Takeuchi and Ryuji Kawano (eligible for best student/postdoc poster award)
#2-06 Size-selective membrane-binding of DNA nanostructures
Javier Cabello Garcia, Elena Georgiou, Yongzheng Xing and Stefan Howorka (eligible for best student/postdoc poster award)
#2-07 Micro-compartmentalized strand displacement reactions with a random pool background
Thomas Mayer, Louis Givelet and Friedrich Simmel (eligible for best student/postdoc poster award)
#2-08 Boltzmann liquids: Learning and inference in biomolecular condensates
Cameron Chalk, Salvador Buse, Arvind Murugan and Erik Winfree (eligible for best student/postdoc poster award)
#2-09 DNA condensate capable of photocontrollable rheological change creates multi-mode DNA microflow
Hirotake Udono, Shin-ichiro M. Nomura and Masahiro Takinoue (eligible for best student/postdoc poster award)
#2-10 A simple symmetry-based approach to designing DNA origami tile assemblies
Daichi Hayakawa, Thomas Videbaek and W. Benjamin Rogers (eligible for best student/postdoc poster award)
#2-11 Harnessing In Situ RNA Strand Displacement Reactions for the Development of Information-Processing Protocell Systems
Zak Marshall, Wooli Bae and Andre Gerber (eligible for best student/postdoc poster award)
#2-12 Dynamic behavior of hydrogel pattern in DNA-based reaction–diffusion system
Jaehyeok Eom, Keita Abe, Ibuki Kawamata, Shinichiro Nomura and Satoshi Murata (eligible for best student/postdoc poster award)
#2-13 DNA Origami as a molecular scaffold for directed membrane budding
Michael Pinner and Hendrik Dietz (eligible for best student/postdoc poster award)
#2-14 A DNA nanodevice that measures the nanomechanics of live-cell membranes
Alexia Rottensteiner, Sioned Fon Jones, Miguel Paez Perez, Yongzheng Xing, Elena Georgiou and Stefan Howorka (eligible for best student/postdoc poster award)
#2-15 Chemical Stabilization of DNA Origami Structures against Enzymatic Degradation
Johanna Mariko Griessing, Alba Monferrer i Sureda, Jessica Kretzmann and Hendrik Dietz (eligible for best student/postdoc poster award)
#2-16 Towards lower latency, energy efficient information retrieval from DNA databases using CRISPR-Cas9
Carina Imburgia, Gwendolin Roote, Lee Organick, Nicolas Cardozo, Karen Zhang, Jeff McBride, Callista Bee, Jessica Dunstan, Delaney Wilde, Sofia Jorgensen, David Ward, Charlie Anderson, Karin Strauss, Luis Ceze and Jeff Nivala (eligible for best student/postdoc poster award)
#2-17 DNA hydrogels for selective capture of cancer cells
Audrey Cochard, Laura Bourdon, Yannick Tauran, Yusuke Sato, Masahiro Takinoue, Teruo Fujii, Soo Hyeon Kim and Anthony Genot (eligible for best student/postdoc poster award)
#2-18 Finding key-differentiating strands to break symmetries between components of a multi-scaffold DNA origami
Octave Hazard and Nicolas Schabanel (eligible for best student/postdoc poster award)
#2-19 NanoSiTE: Rapid and Simple Sequencing-Based Characterization of Site-Occupancy in Functionalized Nanostructures
Enya Engström, Elena Ambrosetti, Joel Spratt, David Fernández Bonet, Ian T. Hoffecker and Ana Teixeira (eligible for best student/postdoc poster award)
#2-20 Exhaustive classification and systematic free-energy profile study of single-stranded DNA inter-overhang migration
Hon Lin Too and Zhisong Wang (eligible for best student/postdoc poster award)
#2-21 Renewable thermodynamically favoured scaffolded DNA programs
Abeer Eshra, Tristan Stérin and Damien Woods (eligible for best student/postdoc poster award)
#2-22 Localized catalytic DNA circuits for scalable molecular computation on a surface
Samuel Davidson and Lulu Qian (eligible for best student/postdoc poster award)
#2-23 Construction of a DNA Switching Circuit with Consciousness based on Integrated Information Theory
Fumika Kambara, Sotaro Takiguchi, Hiroki Watanabe, Masahiro Takinoue and Ryuji Kawano (eligible for best student/postdoc poster award)
#2-24 Compact and Efficient Chemical Boltzmann Machine that Learns
Inhoo Lee and Erik Winfree (eligible for best student/postdoc poster award)
#2-25 Ion Transport Properties in Artificial DNA Channels Revealed by Molecular Dynamics Simulations
Jun Takahashi, Ibuki Kawamata, Yusuke Sato, Takashi Tokumasu and Takuya Mabuchi (eligible for best student/postdoc poster award)
#2-26 Three step design of DNA sequences for temperature dependent devices
Shunpei Ando, Tatsuro Honda and Satoshi Kobayashi (eligible for best student/postdoc poster award)
#2-27 Novel design of DNA feedback regulator towards an experimental feasibility
Chika Muranaka, Kaori Aso and Takashi Nakakuki (eligible for best student/postdoc poster award)
#2-28 Membrane-spanning DNA system: designing strand displacement across lipid bilayers
Sotaro Takiguchi and Ryuji Kawano (eligible for best student/postdoc poster award)
#2-29 A chemically fuelled motor for synthetic molecular machinery
Qian Zhang, Jonathan Bath and Andrew Turberfield (eligible for best student/postdoc poster award)
#2-30 A DNA-based Molecular Event Recorder
Mingzhi Zhang, Rebecca Schulman, Da Han and Weihong Tan (eligible for best student/postdoc poster award)
#2-31 Implementing Cas12a strand displacement guide RNAs in mammalian cells
Lukas Oesinghaus, Georg Seelig and Friedrich Simmel (eligible for best student/postdoc poster award)
#2-32 Modular DNA Origami
Johann Moritz Weck and Amelie Heuer-Jungemann (eligible for best student/postdoc poster award)
#2-33 Enabling Temporal and Spatial Control of Protein Production in Vivo Using DNA Origami
Jared Huzar, Sophia Tomatz, Markita Landry and Grigory Tikhomirov (eligible for best student/postdoc poster award)
#2-34 Harvesting Brownian Motion: Zero Energy Computational Sampling
David Doty, Niels Kornerup, Austin Luchsinger, Leo Orshansky and David Soloveichik (eligible for best student/postdoc poster award)
#2-35 Spatial reconstruction using barcoded DNA sequences
Igor Baars, Alexander Kloosterman and Björn Högberg (eligible for best student/postdoc poster award)
#2-36 DNA conditioned reflex circuit
Masato Toyonari, Kaori Aso, Tom Greef and Takashi Nakakuki (eligible for best student/postdoc poster award)
#2-37 Molecular computation at equilibrium via programmable entropy
Boya Wang, Cameron Chalk, David Doty and David Soloveichik (eligible for best student/postdoc poster award)



Poster Session 3 - September 14th, 13:30-15:30

#3-01 Triplex-forming oligonucleotides: a third strand for DNA nanotechnology
David Rusling
#3-02 Designed DNA-gold nanoparticle crystals with molecular encapsulation and release properties
Maasa Yokomori, Hayato Suzuki, Akiyoshi Nakamura, Yoko Yamanishi, Shigeo. S. Sugano and Miho Tagawa
#3-03 TBNExplorer web tool: domain-level binding abstractions enable faster concentration calculations with NUPACK
Cameron Chalk, Leo Orshansky, David Soloveichik, Elie Soloveichik and Boya Wang
#3-04 Designing RNP network structures for inducing µm-scale molecular assembly
Kazuya Ankai, Hirohisa Ohno, Masahiro Takinoue, Yoshihiro Shimizu, Hirohide Saito and Shin-ichiroM. Nomura
#3-05 Molecular data storage based on high-resolution nanopore detection of DNA nanostructures
Kaikai Chen
#3-06 Quantum Chemical Reaction Networks
Niels Kornerup, Austin Luchsinger and David Soloveichik
#3-07 Plasmon-induced shifts in fluorophore localization studied using DNA-mediated nanodiamond assemblies
Niklas Hansen, David Roesel, Soumya Frederick, Khalillulah Umar, Vaclav Petrak, Miroslav Hekrdla and Vladimira Petrakova
#3-08 Interconnected 2D hierarchical DNA networks assembled by molecular motors
Farhana Afroze, Richard J Archer, Arif Md. Rashedul Kabir, Yuuto Miura, Shin-ichiro M. Nomura, Shogo Hamada and Akira Kakugo
#3-09 A CATANA plugin for DNA-based data storage
Fabian Schroeder, Elisabeth Barisic-Jäger and Ivan Barisic
#3-10 A simple, cheap and enzyme-free detection of nucleic acid
Sona Rani Roy, Nicolas Lobato-Dauzier, Yannick Tauran, Arnaud Brioude, Yannick Rondelez, Guillaume Gines, Antoine Masurier, Xiaojun Lyu, Tsuyoshi Minami, Soo Hyeon Kim, Teruo Fujii and Anthony Genot
#3-11 Simple Cascading of DNA Generation Reaction for Avoiding Leak Amplification
Ken Komiya and Chizuru Noda
#3-12 Emulsion-confined colloidal self-assembly into icosahedral clusters and face-centered cubes
Wu Wenna
#3-13 A Proposal of Real-Time DNA Queue Automaton
Masayuki Nakamura, Rio Mizumoto, Daihei Ise and Satoshi Kobayashi
#3-14 DNA-Guided Functionalization of Carbon Nanotubes with CdTe Quantum Dots for Ecient Light Intensity and Frequency Detection
Durham Smith and Grigory Tikhomirov
#3-15 Folding and stabilization of DNA nanostructures in ionic liquids for long-term storage
Sungwook Woo, Byunghwa Kang and Seung Soo Oh
#3-16 Smart RNA guides for conditional control of CRISPR-Cas9
Alexandre Baccouche, Arman Adel, Nozomu Yachie, Teruo Fujii and Anthony J. Genot
#3-17 Metal-mediated DNA Strand Exchange using Modified Uracil Bases as Metal-binding Sites
Yusuke Takezawa, Keita Mori and Mitsuhiko Shionoya
#3-18 DNA liquid-liquid phase separation engineering for a switch element in DNA reaction networks
Yuta Aizaki and Masahiro Takinoue
#3-19 Multi-dimensional higher-order structures from origami units
Tanxi Bai and Bryan Wei
#3-20 Modeling and simulation of Pavlovian conditioning implemented as enzyme-driven DNA chemical reaction network
Ibuki Kawamata and Satoshi Murata
#3-21 Simultaneously evaluation of mechanical properties for multiple liposomes with a microfluidic device constructed rectangular-shaped funnel channels
Kaoru Uesugi, Taro Toyota and Kazuaki Nagayama
#3-22 Exploration of reservoir properties in molecular computing systems
Mika Ito and Nathanael Aubert-Kato
#3-23 DNA binding properties of selected Manganese Metallosensors
Katarina Radman, Ana Marija Knez, Martina Manenica, Zoe Jelic Matosevic, Ivana Lescic Asler and Branimir Bertosa
#3-24 A droplet microfluidic platform to characterize the self-assembly of DNA nanoparticles into polymorphic structures
Yannick Tauran, Nicolas Lobato-Dauzier, Robin Deteix, Arnaud Brioude, S.H. Kim, Teru Fujii and Anthony Genot
#3-25 Automated Rendering of Multistranded DNA Complexes with Pseudoknots
Malgorzata Nowicka, Vinay Gautam and Pekka Orponen
#3-26 Dissipative DNA nanomaterials programmed with visible light and small molecules
Felix Rizzuto
#3-27 Microbe-synthesised DNA for DNA-based data storage
Ivan Barisic, Friedrich Simmel, Fabian Schroeder, Elisabeth Barisic-Jäger, Harold Paul Vladar, Paulo de Stefanis and Branimir Bertosa
#3-28 Machine-learning-based prediction of DNA structure volume for Quality-Diversity exploration
Maya Hyakuzuka and Nathanael Aubert-Kato